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A meta analysis on effects of Parkinson's Disease using Gemma.R18 days ago
Identifying what to search for | Querying datasets of interest | Filtering the datasets for suitability | Getting the p-values for the condition comparison | Combining the acquired p values | Acquiring the expression data for a top gene | Session info
gemma.R 3.9.3B. Ogan Mancarcimetanalysis.Rmd
A guide to metadata for samples and differential expression analyses1 years ago
Introduction | Dataset tags | Factor values | Sample factor values | Differential expression analysis factor values | Session info
gemma.R 3.9.3B. Ogan Mancarcimetadata.Rmd
Accessing curated gene expression data with gemma.R2 years ago
About Gemma | Package cheat sheet | Installation instructions | Bioconductor | Searching for datasets of interest in Gemma | Downloading expression data | Platform Annotations | Differential expression analyses | Larger queries | Output options | Raw data | File outputs | Memoise data | Changing defaults | Session info
gemma.R 3.9.3Javier Castillo-Arnemann, Jordan Sicherman, B. Ogan Mancarcigemma.R.Rmd